Assessing the laboratory performance of ai-generated enzymes

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A set of 20 computational metrics was evaluated to determine whether they could predict the functionality of synthetic enzyme sequences produced by generative protein models, resulting in


the development of a computational filter, COMPSS, that increased experimental success rates by 50–150%, tested in over 500 natural and AI-generated enzymes. Access through your institution


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ADDITIONAL ACCESS OPTIONS: * Log in * Learn about institutional subscriptions * Read our FAQs * Contact customer support REFERENCES * Repecka, D. et al. Expanding functional protein


sequence spaces using generative adversarial networks. _Nat. Mach. Intell_. 3, 324–333 (2021). AMONG THE FIRST EXPERIMENTALLY VALIDATED GENERATIVE MODELS OF PROTEIN SEQUENCES DEMONSTRATING


THAT AI CAN GENERATE DIVERSE FUNCTIONAL ENZYMES. * Meier, J. et al. Language models enable zero-shot prediction of the effects of mutations on protein function. Preprint at _bioRxiv_


https://doi.org/10.1101/2021.07.09.450648 (2021). THE PAPER PRESENTS ONE OF THE TOP-PERFORMING MODELS THAT ENDED UP IN THE COMPSS FILTER. * Dauparas, J. et al. Robust deep learning-based


protein sequence design using ProteinMPNN. _Science_ 378, 49–56 (2022). THE PAPER PRESENTS ONE OF THE TOP-PERFORMING MODELS THAT ENDED UP IN THE COMPSS FILTER. Article  CAS  PubMed  PubMed


Central  Google Scholar  * Madani, A. et al. Large language models generate functional protein sequences across diverse families. _Nat. Biotechnol._ 41, 1099–1106 (2023). A RECENT GENERATIVE


SEQUENCE MODEL EXAMPLE THAT IS BASED ON A LARGE PROTEIN LANGUAGE TRANSFORMER. Article  CAS  PubMed  PubMed Central  Google Scholar  * Ingraham, J. B. et al. Illuminating protein space with


a programmable generative model. _Nature_ 623, 1070–1078 (2023). A PAPER SHOWING THE SUCCESSFUL APPLICATION OF GENERATIVE DIFFUSION MODELS CONDITIONED ON GEOMETRICAL PROTEIN PROPERTIES.


Article  CAS  PubMed  PubMed Central  Google Scholar  Download references ADDITIONAL INFORMATION PUBLISHER’S NOTE Springer Nature remains neutral with regard to jurisdictional claims in


published maps and institutional affiliations. THIS IS A SUMMARY OF: Johnson, S. R. et al. Computational scoring and experimental evaluation of enzymes generated by neural networks. _Nat.


Biotechnol_. https://doi.org/10.1038/s41587-024-02214-2 (2024). RIGHTS AND PERMISSIONS Reprints and permissions ABOUT THIS ARTICLE CITE THIS ARTICLE Assessing the laboratory performance of


AI-generated enzymes. _Nat Biotechnol_ 43, 308–309 (2025). https://doi.org/10.1038/s41587-024-02239-7 Download citation * Published: 23 April 2024 * Issue Date: March 2025 * DOI:


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