Structural basis for iron piracy by pathogenic neisseria

feature-image

Play all audios:

Loading...

ABSTRACT _Neisseria_ are obligate human pathogens causing bacterial meningitis, septicaemia and gonorrhoea. _Neisseria_ require iron for survival and can extract it directly from human


transferrin for transport across the outer membrane. The transport system consists of TbpA, an integral outer membrane protein, and TbpB, a co-receptor attached to the cell surface; both


proteins are potentially important vaccine and therapeutic targets. Two key questions driving _Neisseria_ research are how human transferrin is specifically targeted, and how the bacteria


liberate iron from transferrin at neutral pH. To address these questions, we solved crystal structures of the TbpA–transferrin complex and of the corresponding co-receptor TbpB. We


characterized the TbpB–transferrin complex by small-angle X-ray scattering and the TbpA–TbpB–transferrin complex by electron microscopy. Our studies provide a rational basis for the


specificity of TbpA for human transferrin, show how TbpA promotes iron release from transferrin, and elucidate how TbpB facilitates this process. Access through your institution Buy or


subscribe This is a preview of subscription content, access via your institution ACCESS OPTIONS Access through your institution Subscribe to this journal Receive 51 print issues and online


access $199.00 per year only $3.90 per issue Learn more Buy this article * Purchase on SpringerLink * Instant access to full article PDF Buy now Prices may be subject to local taxes which


are calculated during checkout ADDITIONAL ACCESS OPTIONS: * Log in * Learn about institutional subscriptions * Read our FAQs * Contact customer support SIMILAR CONTENT BEING VIEWED BY OTHERS


TDFH SELECTIVELY BINDS METAL-LOADED TETRAMERIC CALPROTECTIN FOR ZINC IMPORT Article Open access 31 January 2022 AVAILABILITY OF IRON IONS IMPACTS PHYSICOCHEMICAL PROPERTIES AND PROTEOME OF


OUTER MEMBRANE VESICLES RELEASED BY _NEISSERIA GONORRHOEAE_ Article Open access 31 October 2023 ALLOSTERIC SUBSTRATE RELEASE BY A SIALIC ACID TRAP TRANSPORTER SUBSTRATE BINDING PROTEIN


Article Open access 23 November 2024 ACCESSION CODES PRIMARY ACCESSIONS PROTEIN DATA BANK * 3SKP * 3V83 * 3V89 * 3V8U * 3V8X DATA DEPOSITS Coordinates and structure factors for


TbpA–(apo)hTF, TbpA–(apo)hTF C lobe, diferric hTF, apo-hTF C lobe and TbpB are deposited in the Protein Data Bank under accession codes 3V8X, 3V89, 3V83, 3SKP and 3V8U, respectively.


REFERENCES * Deasy, A. & Read, R. C. Challenges for development of meningococcal vaccines in infants and children. _Expert Rev. Vaccines_ 10, 335–343 (2011) Article  CAS  PubMed  Google


Scholar  * Centers for Disease Control and Prevention. Cephalosporin susceptibility among _Neisseria gonorrhoeae_ isolates—United States, 2000–2010. _Morbid. Mortal. Weekly Rep._ 60, 873–877


(2011) * Grifantini, R. et al. Identification of iron-activated and -repressed Fur-dependent genes by transcriptome analysis of _Neisseria meningitidis_ group B. _Proc. Natl Acad. Sci. USA_


100, 9542–9547 (2003) Article  ADS  CAS  PubMed  PubMed Central  Google Scholar  * Noinaj, N., Guillier, M., Barnard, T. J. & Buchanan, S. K. TonB-dependent transporters: regulation,


structure, and function. _Annu. Rev. Microbiol._ 64, 43–60 (2010) Article  CAS  PubMed  PubMed Central  Google Scholar  * Boulton, I. C. et al. Transferrin-binding protein B isolated from


_Neisseria meningitidis_ discriminates between apo and diferric human transferrin. _Biochem. J._ 334, 269–273 (1998) Article  CAS  PubMed  PubMed Central  Google Scholar  * Krell, T. et al.


Insight into the structure and function of the transferrin receptor from _Neisseria meningitidis_ using microcalorimetric techniques. _J. Biol. Chem._ 278, 14712–14722 (2003) Article  CAS 


PubMed  Google Scholar  * Anderson, J. E., Sparling, P. F. & Cornelissen, C. N. Gonococcal transferrin-binding protein 2 facilitates but is not essential for transferrin utilization. _J.


Bacteriol._ 176, 3162–3170 (1994) Article  CAS  PubMed  PubMed Central  Google Scholar  * Irwin, S. W., Averil, N., Cheng, C. Y. & Schryvers, A. B. Preparation and analysis of isogenic


mutants in the transferrin receptor protein genes, _tbpA_ and _tbpB_, from _Neisseria meningitidis_. _Mol. Microbiol._ 8, 1125–1133 (1993) Article  CAS  PubMed  Google Scholar  * Rokbi, B.


et al. Evaluation of recombinant transferrin-binding protein B variants from _Neisseria meningitidis_ for their ability to induce cross-reactive and bactericidal antibodies against a


genetically diverse collection of serogroup B strains. _Infect. Immun._ 65, 55–63 (1997) CAS  PubMed  PubMed Central  Google Scholar  * Weynants, V. E. et al. Additive and synergistic


bactericidal activity of antibodies directed against minor outer membrane proteins of _Neisseria meningitidis_. _Infect. Immun._ 75, 5434–5442 (2007) Article  CAS  PubMed  PubMed Central 


Google Scholar  * Price, G. A., Masri, H. P., Hollander, A. M., Russell, M. W. & Cornelissen, C. N. Gonococcal transferrin binding protein chimeras induce bactericidal and growth


inhibitory antibodies in mice. _Vaccine_ 25, 7247–7260 (2007) Article  CAS  PubMed  PubMed Central  Google Scholar  * Yost-Daljev, M. K. & Cornelissen, C. N. Determination of


surface-exposed, functional domains of gonococcal transferrin-binding protein A. _Infect. Immun._ 72, 1775–1785 (2004) Article  CAS  PubMed  PubMed Central  Google Scholar  * Noto, J. M.


& Cornelissen, C. N. Identification of TbpA residues required for transferrin-iron utilization by _Neisseria gonorrhoeae_. _Infect. Immun._ 76, 1960–1969 (2008) Article  CAS  PubMed 


PubMed Central  Google Scholar  * Wally, J. et al. The crystal structure of iron-free human serum transferrin provides insight into inter-lobe communication and receptor binding. _J. Biol.


Chem._ 281, 24934–24944 (2006) Article  CAS  PubMed  Google Scholar  * Cornelissen, C. N., Biswas, G. D. & Sparling, P. F. Expression of gonococcal transferrin-binding protein 1 causes


_Escherichia coli_ to bind human transferrin. _J. Bacteriol._ 175, 2448–2450 (1993) Article  CAS  PubMed  PubMed Central  Google Scholar  * Schryvers, A. B. & Morris, L. J.


Identification and characterization of the transferrin receptor from _Neisseria meningitidis_. _Mol. Microbiol._ 2, 281–288 (1988) Article  CAS  PubMed  Google Scholar  * Stokes, R. H.,


Oakhill, J. S., Joannou, C. L., Gorringe, A. R. & Evans, R. W. Meningococcal transferrin-binding proteins A and B show cooperation in their binding kinetics for human transferrin.


_Infect. Immun._ 73, 944–952 (2005) Article  CAS  PubMed  PubMed Central  Google Scholar  * Schryvers, A. B. & Gonzalez, G. C. Comparison of the abilities of different protein sources of


iron to enhance _Neisseria meningitidis_ infection in mice. _Infect. Immun._ 57, 2425–2429 (1989) CAS  PubMed  PubMed Central  Google Scholar  * Calmettes, C. et al. Structural variations


within the transferrin binding site on transferrin-binding protein B, TbpB. _J. Biol. Chem._ 286, 12683–12692 (2011) Article  CAS  PubMed  PubMed Central  Google Scholar  * Moraes, T. F.,


Yu, R. H., Strynadka, N. C. & Schryvers, A. B. Insights into the bacterial transferrin receptor: the structure of transferrin-binding protein B from _Actinobacillus pleuropneumoniae_.


_Mol. Cell_ 35, 523–533 (2009) Article  CAS  PubMed  Google Scholar  * Cornelissen, C. N., Anderson, J. E. & Sparling, P. F. Characterization of the diversity and the transferrin-binding


domain of gonococcal transferrin-binding protein 2. _Infect. Immun._ 65, 822–828 (1997) CAS  PubMed  PubMed Central  Google Scholar  * Silva, L. P. et al. Conserved interaction between


transferrin and transferrin-binding proteins from porcine pathogens. _J. Biol. Chem._ 286, 21353–21360 (2011) Article  CAS  PubMed  PubMed Central  Google Scholar  * Mason, A. B. et al.


Expression, purification, and characterization of authentic monoferric and apo-human serum transferrins. _Protein Expr. Purif._ 36, 318–326 (2004) Article  CAS  PubMed  Google Scholar  *


Svergun, D. I., Petoukhov, M. V. & Koch, M. H. Determination of domain structure of proteins from X-ray solution scattering. _Biophys. J._ 80, 2946–2953 (2001) Article  CAS  PubMed 


PubMed Central  Google Scholar  * Halbrooks, P. J. et al. Investigation of the mechanism of iron release from the C-lobe of human serum transferrin: mutational analysis of the role of a pH


sensitive triad. _Biochemistry_ 42, 3701–3707 (2003) Article  CAS  PubMed  Google Scholar  * Steere, A. N., Byrne, S. L., Chasteen, N. D. & Mason, A. B. Kinetics of iron release from


transferrin bound to the transferrin receptor at endosomal pH. _Biochim._ _ Biophys._. _Acta_http://dx.doi.org/10.1016/j.bbagen.2011.06.003 (2011) * Cheng, Y., Zak, O., Aisen, P., Harrison,


S. C. & Walz, T. Structure of the human transferrin receptor-transferrin complex. _Cell_ 116, 565–576 (2004) Article  CAS  PubMed  Google Scholar  * Eckenroth, B. E., Steere, A. N.,


Chasteen, N. D., Everse, S. J. & Mason, A. B. How the binding of human transferrin primes the transferrin receptor potentiating iron release at endosomal pH. _Proc. Natl Acad. Sci. USA_


108, 13089–13094 (2011) Article  ADS  CAS  PubMed  PubMed Central  Google Scholar  * Hobbs, M. M. et al. Experimental gonococcal infection in male volunteers: cumulative experience with


_Neisseria gonorrhoeae_ strains FA1090 and MS11mkC. _Front. Microbiol._ 2, 123 (2011) Article  PubMed  PubMed Central  Google Scholar  * Scarselli, M. et al. Rational design of a


meningococcal antigen inducing broad protective immunity. _Sci. Transl. Med._ 3, 91ra62 (2011) Article  CAS  PubMed  Google Scholar  * Zak, O. & Aisen, P. A new method for obtaining


human transferrin C-lobe in the native conformation: preparation and properties. _Biochemistry_ 41, 1647–1653 (2002) Article  CAS  PubMed  Google Scholar  * Steere, A. N. et al. Properties


of a homogeneous C-lobe prepared by introduction of a TEV cleavage site between the lobes of human transferrin. _Protein Expr. Purif._ 72, 32–41 (2010) Article  CAS  PubMed  PubMed Central 


Google Scholar  * Phillips, J. C. et al. Scalable molecular dynamics with NAMD. _J. Comput. Chem._ 26, 1781–1802 (2005) Article  CAS  PubMed  PubMed Central  Google Scholar  * Otwinowski, Z.


& Minor, W. Processing of X-ray data collected in oscillation mode. _Methods Enzymol._ 276, 307–326 (1997) Article  CAS  PubMed  Google Scholar  * McCoy, A. J. et al. Phaser


crystallographic software. _J. Appl. Cryst._ 40, 658–674 (2007) Article  CAS  Google Scholar  * Adams, P. D. et al. PHENIX: building new software for automated crystallographic structure


determination. _Acta Crystallogr. D_ 58, 1948–1954 (2002) Article  PubMed  Google Scholar  * Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. _Acta Crystallogr.


D_ 60, 2126–2132 (2004) Article  PubMed  Google Scholar  * Blanc, E. et al. Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT. _Acta Crystallogr. D_ 60,


2210–2221 (2004) Article  CAS  PubMed  Google Scholar  * Arnold, K., Bordoli, L., Kopp, J. & Schwede, T. The SWISS-MODEL workspace: a web-based environment for protein structure homology


modelling. _Bioinformatics_ 22, 195–201 (2006) Article  CAS  PubMed  Google Scholar  * Pettersen, E. F. et al. UCSF Chimera–a visualization system for exploratory research and analysis. _J.


Comput. Chem._ 25, 1605–1612 (2004) Article  CAS  PubMed  Google Scholar  * Petoukhov, M. V. & Svergun, D. I. Analysis of X-ray and neutron scattering from biomacromolecular solutions.


_Curr. Opin. Struct. Biol._ 17, 562–571 (2007) Article  CAS  PubMed  Google Scholar  * Svergun, O. & Genkina, O. A. The dependence of the dynamics of the extinction of a temporary


connection on the recognizability of a reinforcing stimulus [in Russian]. _Zh. Vyssh. Nerv. Deiat. Im. I P Pavlova_ 41, 700–707 (1991) PubMed  Google Scholar  * Volkov, V. V. & Svergun,


D. I. Uniqueness of ab initio shape determination in small-angle scattering. _J. Appl. Cryst._ 36, 860–864 (2003) Article  CAS  Google Scholar  * Shaikh, T. R. et al. SPIDER image processing


for single-particle reconstruction of biological macromolecules from electron micrographs. _Nature Protocols_ 3, 1941–1974 (2008) Article  CAS  PubMed  PubMed Central  Google Scholar  *


Ludtke, S. J. 3-D structures of macromolecules using single-particle analysis in EMAN. _Methods Mol. Biol._ 673, 157–173 (2010) Article  CAS  PubMed  Google Scholar  * Heymann, J. B. &


Belnap, D. M. Bsoft: image processing and molecular modeling for electron microscopy. _J. Struct. Biol._ 157, 3–18 (2007) Article  CAS  PubMed  Google Scholar  * Humphrey, W., Dalke, A.


& Schulten, K. VMD: visual molecular dynamics. _J. Mol. Graph._ 14, 33–38 (1996) Article  CAS  PubMed  Google Scholar  * Gumbart, J., Wiener, M. C. & Tajkhorshid, E. Coupling of


calcium and substrate binding through loop alignment in the outer-membrane transporter BtuB. _J. Mol. Biol._ 393, 1129–1142 (2009) Article  CAS  PubMed  PubMed Central  Google Scholar  *


Sotomayor, M. & Schulten, K. Single-molecule experiments _in vitro_ and _in silico_. _Science_ 316, 1144–1148 (2007) Article  ADS  CAS  PubMed  Google Scholar  * Gumbart, J., Wiener, M.


C. & Tajkhorshid, E. Mechanics of force propagation in TonB-dependent outer membrane transport. _Biophys. J._ 93, 496–504 (2007) Article  ADS  CAS  PubMed  PubMed Central  Google Scholar


  * Gille, C. & Frommel, C. STRAP: editor for STRuctural Alignments of Proteins. _Bioinformatics_ 17, 377–378 (2001) Article  CAS  PubMed  Google Scholar  * Waterhouse, A. M., Procter,


J. B., Martin, D. M., Clamp, M. & Barton, G. J. Jalview Version 2–a multiple sequence alignment editor and analysis workbench. _Bioinformatics_ 25, 1189–1191 (2009) Article  CAS  PubMed


  PubMed Central  Google Scholar  Download references ACKNOWLEDGEMENTS N.N., N.C.E., M.O., E.B. and S.K.B. are supported by the Intramural Research Program of the NIH, National Institute of


Diabetes and Digestive and Kidney Diseases. M.O. was initially funded by an EPSRC Research Committee Studentship awarded to S.K.B. and R.W.E. N.M. and A.C.S. are supported by the Intramural


Research Program of the NIH, National Institute of Arthritis and Musculoskeletal and Skin Diseases. A.B.M. was supported in part by USPHS grant R01-DK21739. A.N.S. is funded by an AHA


Predoctoral Fellowship (10PRE4200010). E.T. acknowledges NIH support by R01-GM086749, U54-GM087519 and P41-RR05969. All the simulations were performed using TeraGrid resources (MCA06N060).


We thank the respective staffs at the Southeast Regional Collaborative Access Team (SER-CAT) and General Medicine and Cancer Institutes Collaborative Access Team (GM/CA-CAT) beamlines at the


Advanced Photon Source, Argonne National Laboratory for their assistance during data collection. Use of the Advanced Photon Source was supported by the US Department of Energy, Office of


Science, Office of Basic Energy Sciences, under Contract No. W-31-109-Eng-38 (SER-CAT), and by the US Department of Energy, Basic Energy Sciences, Office of Science, under contract No.


DE-AC02-06CH11357 (GM/CA-CAT). Portions of this research were carried out at the Stanford Synchrotron Radiation Laboratory, a national user facility operated by Stanford University on behalf


of the US Department of Energy, Office of Basic Energy Sciences. The SSRL Structural Molecular Biology Program is supported by the Department of Energy, Office of Biological and


Environmental Research, and by the National Institutes of Health, National Center for Research Resources, Biomedical Technology Program. AUTHOR INFORMATION AUTHORS AND AFFILIATIONS *


Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, US National Institutes of Health, Bethesda, 20892, Maryland, USA Nicholas Noinaj, Nicole C.


Easley, Muse Oke, Evzen Boura & Susan K. Buchanan * Laboratory of Structural Biology, National Institute of Arthritis and Musculoskeletal and Skin Diseases, US National Institutes of


Health, Bethesda, 20892, Maryland, USA Naoko Mizuno & Alasdair C. Steven * Biosciences Division, Argonne National Laboratory, Argonne, 60439, Illinois, USA James Gumbart * Department of


Biochemistry, University of Vermont, College of Medicine, 89 Beaumont Avenue, Burlington, Vermont 05405, USA, Ashley N. Steere & Anne B. Mason * Albert Einstein College of Medicine, 1300


Morris Park Avenue, Bronx, New York 10461, USA, Olga Zak & Philip Aisen * Department of Biochemistry and Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, 61801,


Illinois, USA Emad Tajkhorshid * Division of Biosciences, Metalloprotein Research Group, School of Health Sciences and Social Care, Brunel University, Uxbridge, Middlesex UB8 3PH, UK, Robert


W. Evans * Health Protection Agency, Porton Down, Salisbury SP2 8NY, UK, Andrew R. Gorringe Authors * Nicholas Noinaj View author publications You can also search for this author inPubMed 


Google Scholar * Nicole C. Easley View author publications You can also search for this author inPubMed Google Scholar * Muse Oke View author publications You can also search for this author


inPubMed Google Scholar * Naoko Mizuno View author publications You can also search for this author inPubMed Google Scholar * James Gumbart View author publications You can also search for


this author inPubMed Google Scholar * Evzen Boura View author publications You can also search for this author inPubMed Google Scholar * Ashley N. Steere View author publications You can


also search for this author inPubMed Google Scholar * Olga Zak View author publications You can also search for this author inPubMed Google Scholar * Philip Aisen View author publications


You can also search for this author inPubMed Google Scholar * Emad Tajkhorshid View author publications You can also search for this author inPubMed Google Scholar * Robert W. Evans View


author publications You can also search for this author inPubMed Google Scholar * Andrew R. Gorringe View author publications You can also search for this author inPubMed Google Scholar *


Anne B. Mason View author publications You can also search for this author inPubMed Google Scholar * Alasdair C. Steven View author publications You can also search for this author inPubMed 


Google Scholar * Susan K. Buchanan View author publications You can also search for this author inPubMed Google Scholar CONTRIBUTIONS N.N., N.C.E., M.O. and S.K.B. expressed, purified and


crystallized TbpA, TbpB and various hTFs. N.N. solved all crystal structures and the SAXS structure and analysed all data. A.B.M. and A.N.S. designed and purified apo-hTF, holo-hTF, hTF–FeN


and hTF–FeC for binding experiments with TbpA and TbpB; they also expressed and purified hTF C lobe for the corresponding structure (PDB code 3SKP). P.A. and O.Z. expressed and purified hTF


C lobe for the TbpA–(apo)hTF C-lobe structure (PDB code 3V89). N.M. and A.C.S. designed, conducted and analysed EM experiments. E.T. and J.G. designed, conducted and analysed molecular


dynamics simulations. E.B. participated in the data collection and analysis of the SAXS data. R.W.E., A.R.G. and S.K.B. conceived and designed the original project. N.N. and S.K.B. wrote the


manuscript. CORRESPONDING AUTHOR Correspondence to Susan K. Buchanan. ETHICS DECLARATIONS COMPETING INTERESTS The authors declare no competing financial interests. SUPPLEMENTARY INFORMATION


SUPPLEMENTARY INFORMATION This file contains Supplementary Figures 1-18 with legends, Supplementary Tables 1-4, full legends for Supplementary Movies 1-2 and additional references. (PDF


28815 kb) SUPPLEMENTARY MOVIE 1 The movie shows the molecular dynamics simulation of the TbpA-TonB interaction (see Supplementary Information file for full legend). (MOV 19599 kb)


SUPPLEMENTARY MOVIE 2 The movie shows the iron import machinery from pathogenic _Neisseria_ (see Supplementary Information file for full legend). (MOV 29868 kb) POWERPOINT SLIDES POWERPOINT


SLIDE FOR FIG. 1 POWERPOINT SLIDE FOR FIG. 2 POWERPOINT SLIDE FOR FIG. 3 POWERPOINT SLIDE FOR FIG. 4 POWERPOINT SLIDE FOR FIG. 5 RIGHTS AND PERMISSIONS Reprints and permissions ABOUT THIS


ARTICLE CITE THIS ARTICLE Noinaj, N., Easley, N., Oke, M. _et al._ Structural basis for iron piracy by pathogenic _Neisseria_. _Nature_ 483, 53–58 (2012). https://doi.org/10.1038/nature10823


Download citation * Received: 19 September 2011 * Accepted: 09 January 2012 * Published: 12 February 2012 * Issue Date: 01 March 2012 * DOI: https://doi.org/10.1038/nature10823 SHARE THIS


ARTICLE Anyone you share the following link with will be able to read this content: Get shareable link Sorry, a shareable link is not currently available for this article. Copy to clipboard


Provided by the Springer Nature SharedIt content-sharing initiative